# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	109	-1	5904698	+	okay	okay	exclude	qry	5	-1	1342553	+	okay	okay	okay
0	ref	67	5891774	-1	+	okay	okay	exclude	qry	5	1329666	-1	+	okay	okay	okay
0	ref	17	5877727	-1	+	cut	okay	okay	qry	5	1087268	-1	+	okay	okay	okay
0	ref	17	-1	5878916	+	okay	cut	okay	qry	5	-1	1316758	+	okay	okay	okay
0	ref	130	5904638	-1	+	okay	okay	exclude	qry	5	1342493	-1	+	okay	okay	okay
28	ref	17	-1	5902166	+	okay	okay	okay	qry	18	-1	7301940	+	okay	okay	okay
0	ref	126	5921893	-1	+	okay	okay	exclude	qry	5	1359659	-1	+	okay	okay	okay
0	ref	102	-1	5891834	+	okay	okay	exclude	qry	5	-1	1329726	+	okay	okay	okay
0	ref	94	5921893	-1	+	okay	okay	exclude	qry	5	1359659	-1	+	okay	okay	okay
