# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	94	-1	1239760	+	okay	okay	exclude	qry	24	-1	311242	+	okay	okay	okay
0	ref	33	-1	1563624	+	okay	okay	okay	qry	46	-1	272980	+	okay	okay	exclude
0	ref	7	-1	18607666	+	okay	cut	okay	qry	2	-1	3472166	+	okay	okay	okay
0	ref	33	1209837	-1	+	okay	okay	okay	qry	24	281690	-1	+	okay	okay	exclude
0	ref	33	1239700	-1	+	cut	okay	okay	qry	24	311182	-1	+	okay	okay	okay
0	ref	84	1219784	-1	+	okay	okay	exclude	qry	24	291584	-1	+	okay	okay	okay
28	ref	25	-1	6291883	-	okay	cut	okay	qry	14	-1	12155716	-	okay	okay	okay
0	ref	33	-1	1199944	+	okay	okay	okay	qry	22	-1	271962	+	okay	okay	exclude
0	ref	80	1250758	-1	+	okay	okay	exclude	qry	24	321671	-1	+	okay	okay	okay
0	ref	47	1260716	-1	+	okay	okay	exclude	qry	24	331554	-1	+	okay	okay	okay
0	ref	115	-1	1239760	+	okay	okay	okay	qry	24	-1	311242	+	okay	okay	okay
0	ref	33	-1	1219844	+	okay	okay	okay	qry	19	-1	291644	+	okay	okay	exclude
0	ref	138	1250758	-1	+	okay	okay	exclude	qry	24	321671	-1	+	okay	okay	okay
0	ref	109	25303648	-1	+	okay	okay	exclude	qry	7	25352068	-1	+	okay	okay	okay
0	ref	115	-1	11424967	+	okay	okay	exclude	qry	7	-1	11440555	+	okay	okay	okay
