# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
21	ref	19	-1	10350256	+	okay	cut	okay	qry	12	-1	16749316	+	okay	okay	okay
0	ref	103	-1	5409925	+	okay	okay	exclude	qry	12	-1	11868540	+	okay	okay	okay
0	ref	68	9213333	-1	+	okay	okay	exclude	qry	12	15684714	-1	+	okay	okay	okay
0	ref	47	9213333	-1	+	okay	okay	exclude	qry	12	15684714	-1	+	okay	okay	okay
