# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	30	160396	-1	+	okay	okay	exclude	qry	49	174827	-1	+	okay	okay	okay
0	ref	54	160396	-1	+	okay	okay	exclude	qry	49	174827	-1	+	okay	okay	okay
0	ref	98	117516	-1	+	okay	okay	exclude	qry	49	133416	-1	+	okay	okay	okay
0	ref	45	160396	-1	+	okay	okay	exclude	qry	49	174827	-1	+	okay	okay	okay
0	ref	43	160396	-1	+	okay	okay	exclude	qry	49	174827	-1	+	okay	okay	okay
0	ref	53	149676	-1	+	okay	okay	okay	qry	28	164408	-1	+	okay	okay	exclude
0	ref	53	-1	160456	+	okay	okay	okay	qry	25	-1	174887	+	okay	okay	exclude
0	ref	55	138956	-1	+	okay	okay	exclude	qry	49	154059	-1	+	okay	okay	okay
0	ref	53	-1	117576	+	okay	okay	okay	qry	49	-1	133476	+	okay	okay	exclude
0	ref	53	96076	-1	+	okay	okay	exclude	qry	49	112437	-1	+	okay	okay	okay
0	ref	6	334756	-1	+	cut	okay	okay	qry	2	14477261	-1	+	okay	okay	okay
0	ref	60	96076	-1	+	okay	okay	exclude	qry	49	112437	-1	+	okay	okay	okay
0	ref	42	40692	-1	+	cut	okay	okay	qry	22	428244	-1	+	okay	okay	okay
0	ref	57	149676	-1	+	okay	okay	exclude	qry	49	164408	-1	+	okay	okay	okay
0	ref	44	138956	-1	+	okay	okay	exclude	qry	49	154059	-1	+	okay	okay	okay
0	ref	4	37329751	-1	+	cut	okay	okay	qry	13	13786819	-1	+	okay	okay	okay
0	ref	53	-1	160456	+	okay	okay	okay	qry	21	-1	174887	+	okay	okay	exclude
0	ref	36	208336	-1	+	cut	okay	okay	qry	22	392742	-1	+	okay	okay	okay
0	ref	33	138956	-1	+	okay	okay	exclude	qry	49	154059	-1	+	okay	okay	okay
0	ref	89	-1	149736	+	okay	okay	exclude	qry	49	-1	164468	+	okay	okay	okay
0	ref	53	160396	-1	+	okay	okay	okay	qry	24	174827	-1	+	okay	okay	exclude
