# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	48	254927	-1	+	okay	okay	exclude	qry	20	381460	-1	+	okay	okay	okay
0	ref	42	-1	224717	+	okay	okay	exclude	qry	20	-1	412289	+	okay	okay	okay
0	ref	69	-1	25558098	+	okay	okay	exclude	qry	8	-1	25556531	+	okay	okay	okay
0	ref	41	194827	-1	+	okay	okay	exclude	qry	20	443562	-1	+	okay	okay	okay
0	ref	39	-1	204537	+	okay	okay	exclude	qry	20	-1	433090	+	okay	okay	okay
0	ref	53	-1	234367	+	okay	okay	exclude	qry	20	-1	402376	+	okay	okay	okay
0	ref	67	20740171	-1	+	okay	okay	exclude	qry	8	20725972	-1	+	okay	okay	okay
0	ref	59	-1	22966267	+	okay	okay	exclude	qry	8	-1	22959317	+	okay	okay	okay
0	ref	54	224657	-1	+	okay	okay	exclude	qry	20	412229	-1	+	okay	okay	okay
0	ref	43	184517	-1	+	okay	okay	exclude	qry	20	454115	-1	+	okay	okay	exclude
0	ref	46	16872053	-1	+	okay	okay	exclude	qry	8	16859649	-1	+	okay	okay	okay
0	ref	51	-1	22892817	+	okay	okay	exclude	qry	8	-1	22885837	+	okay	okay	okay
0	ref	52	-1	24389555	+	okay	okay	exclude	qry	8	-1	24387481	+	okay	okay	okay
0	ref	57	244617	-1	+	okay	okay	exclude	qry	20	391899	-1	+	okay	okay	okay
0	ref	62	23259180	-1	+	okay	okay	exclude	qry	8	23252555	-1	+	okay	okay	okay
0	ref	63	-1	23695761	+	okay	okay	exclude	qry	8	-1	23690026	+	okay	okay	okay
0	ref	50	-1	16795876	+	okay	okay	exclude	qry	8	-1	16783242	+	okay	okay	okay
0	ref	37	-1	234367	+	okay	okay	exclude	qry	20	-1	402376	+	okay	okay	okay
